Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs200855822 chr15:30782220 GT/G 0 176 25.92 20.37 3.17 KM Plot
PCPG rs200900777 chr8:126209289 TG/T 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs200939653 chr16:89821620 ATT/A 0.000244 173 25.87 20.13 36.37 KM Plot
PCPG rs200987851 chr2:118563433 G/A 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs200993858 chr7:158874354 C/T 0 176 25.28 41.8 3.17 KM Plot
PCPG rs201018238 chr10:29834962 T/TA 5.57E-11 175 25.6 22.05 10.3 KM Plot
PCPG rs201064923 chr7:38763161 C/CA 1.02E-7 178 25.87 19.88 19.87 KM Plot
PCPG rs201230143 chr12:56738816 GC/G 9.68E-8 178 25.17 29.13 0.8 KM Plot
PCPG rs201273995 chr16:71802662 C/CA 0.000172 172 24.7 29.43 6.58 KM Plot
PCPG rs2013260 chr17:65796533 C/T 0.000472 176 24.5 36 8.22 KM Plot
PCPG rs201333872 chr13:114153217 GT/G 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs201401518 chr2:118566013 G/T 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs201787946 chr13:114170878 CT/C 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2018682 chr22:21317432 A/G 0.000411 178 24.1 28.47 22.33 KM Plot
PCPG rs201967097 chr2:242554304 CAAAACAAAAACA/C 4.16E-5 177 25.87 27.27 20.2 KM Plot